Combine Methods

A wrapper for summarise_taxa prop_reads, occupancy_core, abundance_and_occupancy_core and hard_cutoff methods

Usage

core_methods(otu_table, taxa_as_rows = TRUE)

Arguments

otu_table

a dataframe of OTUs where the first row is the OTU ID and column names refer to sites

taxa_as_rows

logical data must be in a format where the taxa are rows and the sites are columns. The default value is TRUE, if FALSE data will be transposed for downstream analysis.

Value

a dataframe with all observed taxa, their inclusion to the core by method (delineated as a 1 or 0), the mean, variance, and coefficient of variation.

Examples

if (FALSE) core_methods(arabidopsis)