Function reference • CoreMicro

All functions

abundance_and_occupancy_core(): Proportion of Reads and Replicates:

abundance_core(): Summation of Reads:

arabidopsis: Descritpion for subset of Arabidopsis dataset used for comparison of core assignment methods

common_core(): Common Core

core_methods(): Combine Methods

core_plots(): Generate a plot using the output from combined_methods

core_venn(): Core Venn Diagram

hard_cutoff(): Hard Cut-Off

human_stool: Descritpion for subset of the human microbiome dataset used for comparison of core assignment methods. Methods for filtering of the original dataset can be found in data-raw/human.R.

occupancy_core(): Proportion of Replicates

summarise_taxa(): Calculate the mean, variance and CV of each OTU

transpose_taxa(): If data are arranged where taxa are columns and sites rows we need to transpose the data for downstream analysis